Claim OwnershipAI in Biomolecules
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Daily summaries of preprints from arXiv and bioRxiv.
Generated for AI in Biomolecules.
Generated for AI in Biomolecules.
23 Episodes
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Papers included in this episode:
1:01 - RXNRECer Enables Fine-grained Enzymatic Function Annotation through Active Learning and Protein Language Models
https://export.arxiv.org/pdf/2603.12694.pdf
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Papers included in this episode:
0:58 - EvoFlows: Evolutionary Edit-Based Flow-Matching for Protein Engineering
https://export.arxiv.org/pdf/2603.11703.pdf
5:21 - Topological Enhancement of Protein Kinetic Stability
https://export.arxiv.org/pdf/2603.12053.pdf
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Papers included in this episode:
1:00 - Protein Counterfactuals via Diffusion-Guided Latent Optimization
https://export.arxiv.org/pdf/2603.10811.pdf
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Papers included in this episode:
0:58 - Joint Geometric-Chemical Distance for Protein Surfaces
https://export.arxiv.org/pdf/2603.09860.pdf
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Papers included in this episode:
0:55 - Adversarial Domain Adaptation Enables Knowledge Transfer Across Heterogeneous RNA-Seq Datasets
https://export.arxiv.org/pdf/2603.08062.pdf
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Papers included in this episode:
1:04 - Sampling-based Continuous Optimization for Messenger RNA Design
https://export.arxiv.org/pdf/2603.06559.pdf
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Papers included in this episode:
0:41 - Inference-Time Toxicity Mitigation in Protein Language Models
https://export.arxiv.org/pdf/2603.04045.pdf
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Papers included in this episode:
0:52 - ProtRLSearch: A Multi-Round Multimodal Protein Search Agent with Large Language Models Trained via Reinforcement Learning
https://export.arxiv.org/pdf/2603.01464.pdf
4:54 - Multimodal Mixture-of-Experts with Retrieval Augmentation for Protein Active Site Identification
https://export.arxiv.org/pdf/2603.01511.pdf
9:44 - Rigidity-Aware Geometric Pretraining for Protein Design and Conformational Ensembles
https://export.arxiv.org/pdf/2603.02406.pdf
13:09 - Deep learning-guided evolutionary optimization for protein design
https://export.arxiv.org/pdf/2603.02753.pdf
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Papers included in this episode:
0:42 - Inference-time optimization for experiment-grounded protein ensemble generation
https://export.arxiv.org/pdf/2602.24007.pdf
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Papers included in this episode:
0:56 - Induction Meets Biology: Mechanisms of Repeat Detection in Protein Language Models
https://export.arxiv.org/pdf/2602.23179.pdf
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Papers included in this episode:
0:50 - Spectral entropy of the discrete Hasimoto effective potential exposes sub-residue geometric transitions in protein secondary structure
https://export.arxiv.org/pdf/2602.21787.pdf
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Papers included in this episode:
0:47 - PIS: A Physics-Informed System for Accurate State Partitioning of $Aβ_{42}$ Protein Trajectories
https://export.arxiv.org/pdf/2602.19444.pdf
4:45 - Protein Language Models Diverge from Natural Language: Comparative Analysis and Improved Inference
https://export.arxiv.org/pdf/2602.20449.pdf
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Papers included in this episode:
0:41 - Physical principles of building protein megacomplexes in a crowded milieu
https://export.arxiv.org/pdf/2602.14005.pdf
4:54 - Exploring the limits of pre-trained embeddings in machine-guided protein design: a case study on predicting AAV vector viability
https://export.arxiv.org/pdf/2602.14828.pdf
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Papers included in this episode:
0:48 - Point transformer for protein structural heterogeneity analysis using CryoEM
https://export.arxiv.org/pdf/2601.18713.pdf
5:29 - Structure-based RNA Design by Step-wise Optimization of Latent Diffusion Model
https://export.arxiv.org/pdf/2601.19232.pdf
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Papers included in this episode:
1:02 - Case-Guided Sequential Assay Planning in Drug Discovery
https://export.arxiv.org/pdf/2601.14710.pdf
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Papers included in this episode:
0:50 - Efficient Protein Optimization via Structure-aware Hamiltonian Dynamics
https://export.arxiv.org/pdf/2601.11012.pdf
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Papers included in this episode:
0:59 - MMPG: MoE-based Adaptive Multi-Perspective Graph Fusion for Protein Representation Learning
https://export.arxiv.org/pdf/2601.10157.pdf
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Papers included in this episode:
0:49 - Tensor-DTI: Enhancing Biomolecular Interaction Prediction with Contrastive Embedding Learning
https://arxiv.org/pdf/2601.05792.pdf
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Papers included in this episode:
1:02 - Roadmap for Condensates in Cell Biology
https://arxiv.org/pdf/2601.03677.pdf
6:17 - Investigating Knowledge Distillation Through Neural Networks for Protein Binding Affinity Prediction
https://arxiv.org/pdf/2601.03704.pdf
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Papers included in this episode:
0:00 - Paper (ID: 2601.00599)
https://arxiv.org/abs/2601.00599
4:29 - Paper (ID: 2601.00618)
https://arxiv.org/abs/2601.00618
8:28 - Paper (ID: 2601.00769)
https://arxiv.org/abs/2601.00769
12:34 - Fold-switching proteins push the boundaries of conformational ensemble prediction
https://arxiv.org/pdf/2601.01740.pdf
17:28 - Paper (ID: 2601.02265)
https://arxiv.org/abs/2601.02265
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