Claim OwnershipDecoding Biomolecular Languages
Subscribed: 0Played: 0
Subscribe
Description
Daily summaries of preprints from arXiv and bioRxiv.
Generated for Decoding Biomolecular Languages.
Generated for Decoding Biomolecular Languages.
28 Episodes
Reverse
This podcast is brought to you by Scholar FM.
----------------------------------------
Papers included in this episode:
0:08 - Estimating Protein Conformational States from High-Speed AFM Images with Molecular Dynamics and Deep Learning.
https://doi.org/10.1021/acs.jcim.6c00142
1:01 - Discovery of WRN helicase inhibitors by 3D-CNN docking and ML consensus from traditional Chinese medicine monomers.
https://doi.org/10.1016/j.jmgm.2026.109376
1:53 - Constructing and characterizing trillion-scale combinatorial chemical library.
https://doi.org/10.1186/s13321-026-01185-7
2:44 - SiteContext: A Web Server for Protein Binding Site Comparison.
https://doi.org/10.1016/j.jmb.2026.169791
3:38 - HybridMolGen: A Unified Framework for Goal-Directed Molecular Generation via Multi-Objective Reinforcement Learning.
https://doi.org/10.1093/bioinformatics/btag170
----------------------------------------
scholarfm.com
This podcast is brought to you by bibcast.
----------------------------------------
Papers included in this episode:
1:01 - RiboSphere: Learning Unified and Efficient Representations of RNA Structures
https://export.arxiv.org/pdf/2603.19636.pdf
5:15 - Conditioning Protein Generation via Hopfield Pattern Multiplicity
https://export.arxiv.org/pdf/2603.20115.pdf
----------------------------------------
bibcast.com
This podcast is brought to you by bibcast.
----------------------------------------
Papers included in this episode:
0:41 - The Convergence Frontier: Integrating Machine Learning and High Performance Quantum Computing for Next-Generation Drug Discovery
https://export.arxiv.org/pdf/2603.17790.pdf
4:40 - CAPSUL: A Comprehensive Human Protein Benchmark for Subcellular Localization
https://export.arxiv.org/pdf/2603.18571.pdf
8:49 - BVSIMC: Bayesian Variable Selection-Guided Inductive Matrix Completion for Improved and Interpretable Drug Discovery
https://export.arxiv.org/pdf/2603.18957.pdf
----------------------------------------
bibcast.com
This podcast is brought to you by bibcast.
----------------------------------------
Papers included in this episode:
0:45 - The Convergence Frontier: Integrating Machine Learning and High Performance Quantum Computing for Next-Generation Drug Discovery
https://export.arxiv.org/pdf/2603.17790.pdf
----------------------------------------
bibcast.com
This podcast is brought to you by bibcast.
----------------------------------------
Papers included in this episode:
1:00 - Protein Design with Agent Rosetta: A Case Study for Specialized Scientific Agents
https://export.arxiv.org/pdf/2603.15952.pdf
----------------------------------------
bibcast.com
This podcast is brought to you by bibcast.
----------------------------------------
Papers included in this episode:
1:01 - RXNRECer Enables Fine-grained Enzymatic Function Annotation through Active Learning and Protein Language Models
https://export.arxiv.org/pdf/2603.12694.pdf
----------------------------------------
bibcast.com
This podcast is brought to you by bibcast.
----------------------------------------
Papers included in this episode:
0:58 - EvoFlows: Evolutionary Edit-Based Flow-Matching for Protein Engineering
https://export.arxiv.org/pdf/2603.11703.pdf
5:21 - Topological Enhancement of Protein Kinetic Stability
https://export.arxiv.org/pdf/2603.12053.pdf
----------------------------------------
bibcast.com
This podcast is brought to you by bibcast.
----------------------------------------
Papers included in this episode:
1:00 - Protein Counterfactuals via Diffusion-Guided Latent Optimization
https://export.arxiv.org/pdf/2603.10811.pdf
----------------------------------------
bibcast.com
This podcast is brought to you by bibcast.
----------------------------------------
Papers included in this episode:
0:58 - Joint Geometric-Chemical Distance for Protein Surfaces
https://export.arxiv.org/pdf/2603.09860.pdf
----------------------------------------
bibcast.com
This podcast is brought to you by bibcast.
----------------------------------------
Papers included in this episode:
0:55 - Adversarial Domain Adaptation Enables Knowledge Transfer Across Heterogeneous RNA-Seq Datasets
https://export.arxiv.org/pdf/2603.08062.pdf
----------------------------------------
bibcast.com
This podcast is brought to you by bibcast.
----------------------------------------
Papers included in this episode:
1:04 - Sampling-based Continuous Optimization for Messenger RNA Design
https://export.arxiv.org/pdf/2603.06559.pdf
----------------------------------------
bibcast.com
This podcast is brought to you by bibcast.
----------------------------------------
Papers included in this episode:
0:41 - Inference-Time Toxicity Mitigation in Protein Language Models
https://export.arxiv.org/pdf/2603.04045.pdf
----------------------------------------
bibcast.com
This podcast is brought to you by bibcast.
----------------------------------------
Papers included in this episode:
0:52 - ProtRLSearch: A Multi-Round Multimodal Protein Search Agent with Large Language Models Trained via Reinforcement Learning
https://export.arxiv.org/pdf/2603.01464.pdf
4:54 - Multimodal Mixture-of-Experts with Retrieval Augmentation for Protein Active Site Identification
https://export.arxiv.org/pdf/2603.01511.pdf
9:44 - Rigidity-Aware Geometric Pretraining for Protein Design and Conformational Ensembles
https://export.arxiv.org/pdf/2603.02406.pdf
13:09 - Deep learning-guided evolutionary optimization for protein design
https://export.arxiv.org/pdf/2603.02753.pdf
----------------------------------------
bibcast.com
This podcast is brought to you by bibcast.
----------------------------------------
Papers included in this episode:
0:42 - Inference-time optimization for experiment-grounded protein ensemble generation
https://export.arxiv.org/pdf/2602.24007.pdf
----------------------------------------
bibcast.com
This podcast is brought to you by bibcast.
----------------------------------------
Papers included in this episode:
0:56 - Induction Meets Biology: Mechanisms of Repeat Detection in Protein Language Models
https://export.arxiv.org/pdf/2602.23179.pdf
----------------------------------------
bibcast.com
This podcast is brought to you by bibcast.
----------------------------------------
Papers included in this episode:
0:50 - Spectral entropy of the discrete Hasimoto effective potential exposes sub-residue geometric transitions in protein secondary structure
https://export.arxiv.org/pdf/2602.21787.pdf
----------------------------------------
bibcast.com
This podcast is brought to you by bibcast.
----------------------------------------
Papers included in this episode:
0:47 - PIS: A Physics-Informed System for Accurate State Partitioning of $Aβ_{42}$ Protein Trajectories
https://export.arxiv.org/pdf/2602.19444.pdf
4:45 - Protein Language Models Diverge from Natural Language: Comparative Analysis and Improved Inference
https://export.arxiv.org/pdf/2602.20449.pdf
----------------------------------------
bibcast.com
This podcast is brought to you by bibcast.
----------------------------------------
Papers included in this episode:
0:41 - Physical principles of building protein megacomplexes in a crowded milieu
https://export.arxiv.org/pdf/2602.14005.pdf
4:54 - Exploring the limits of pre-trained embeddings in machine-guided protein design: a case study on predicting AAV vector viability
https://export.arxiv.org/pdf/2602.14828.pdf
----------------------------------------
bibcast.com
This podcast is brought to you by bibcast.
----------------------------------------
Papers included in this episode:
0:48 - Point transformer for protein structural heterogeneity analysis using CryoEM
https://export.arxiv.org/pdf/2601.18713.pdf
5:29 - Structure-based RNA Design by Step-wise Optimization of Latent Diffusion Model
https://export.arxiv.org/pdf/2601.19232.pdf
----------------------------------------
bibcast.com
This podcast is brought to you by bibcast.
----------------------------------------
Papers included in this episode:
1:02 - Case-Guided Sequential Assay Planning in Drug Discovery
https://export.arxiv.org/pdf/2601.14710.pdf
----------------------------------------
bibcast.com
Comments
Download from Google Play
Download from App Store
United States