Data Skeptic

Our new season "Graphs and Networks" begins here!  We are joined by new co-host Asaf Shapira, a network analysis consultant and the podcaster of NETfrix – the network science podcast. Kyle and Asaf discuss ideas to cover in the season and explore Asaf's work in the field.

Join us for our capstone episode on the Animal Intelligence season. We recap what we loved, what we learned, and things we wish we had gotten to spend more time on. This is a great episode to see how the podcast is produced. Now that the season is ending, our current co-host, Becky, is moving to emeritus status. In this last installment we got to spend a little more time getting to know Becky and where her work will take her after this. Did Data Skeptic inspire her to learn more about machine learning? Tune in and find out. 

David Obembe, a recent University of Tartu graduate, discussed his Masters thesis on integrating LLMs with process mining tools. He explained how process mining uses event logs to create maps that identify inefficiencies in business processes. David shared his research on LLMs' potential to enhance process mining, including experiments evaluating their performance and future improvements using Retrieval Augmented Generation (RAG).

Our guest today is Risa Shinoda, a PhD student at Kyoto University Agricultural Systems Engineering Lab, where she applies computer vision techniques. She talked about the OpenAnimalTracks dataset and what it was used for. The dataset helps researchers predict animal footprint. She also discussed how she built a model for predicting tracks of animals. She shared the algorithms used and the accuracy they achieved. She also discussed further improvement opportunities for the model.

This episode features an interview with Mélisande Teng, a PhD candidate at Université de Montréal. Her research lies in the intersection of remote sensing and computer vision for biodiversity monitoring.

In this interview with author Deborah Gordon, Kyle asks questions about the mechanisms at work in an ant colony and what ants might teach us about how to build artificial intelligence. Ants are surprisingly adaptive creatures whose behavior emerges from their complex interactions. Aspects of network theory and the statistical nature of ant behavior are just some of the interesting details you'll get in this episode.  

This season it’s become clear that computing skills are vital for working in the natural sciences. In this episode, we were fortunate to speak with Madlen Wilmes, co-author of the book "Computing Skills for Biologists: A Toolbox". We discussed the book and why it’s a great resource for students and teachers. In addition to the book, Madlen shared her experience and advice on transitioning from academia to an industry career and how data analytic skills transfer to jobs that your professionals might not always consider. Join us and learn more about the book and careers using transferable skills.

In this episode, we talked shop with Hager Radi about her biodiversity monitoring work. While biodiversity modeling may sound simple, count organisms and mark their location, there is a lot more to it than that! Incomplete and biased data can make estimations hard. There are also many species with very few observations in the wild. Using machine learning and remote sensing data, scientists can build models that predict species distributions with limited data. Listen in and hear about Hager’s work tackling these challenges and the tools she has built.

Today, Ashay Aswale and Tony Lopez shared their work on swarm robotics and what they have learned from ants. Robotic swarms must solve the same problems that eusocial insects do. What if your pheromone trail goes cold? What if you’re getting bad information from a bad-actor within the swarm? Answering these questions can help tackle serious robotic challenges. For example, a swarm of robots can lose a few members to accidents and malfunctions, but a large robot cannot. Additionally, a swarm could be host to many castes like an ant colony. Specialization with redundancy built in seems like a win-win! Tune in and hear more about this fascinating topic.

During this season we have talked with researchers working to utilize machine learning for behavioral observations. In previous episodes, you have heard about the software people like Richard use, but you haven’t heard much from scientists modifying and using these tools for specific research cases. PhD student, Richard Vogg, is working with multi-camera set-ups to track lemurs and macaques solving puzzle boxes in the wild. His work is part of a larger movement to automate behavioral analyses of video data. Listen in and learn why this tech is useful and why multi-camera setups are a good idea for more reliably identifying poses and individual animals.

Generative AI can struggle to create realistic animals and 2D representations often have mistakes like extra limbs and tails. If 2D wasn’t hard enough, there are researchers working on generative 3D models. 3D models present an extra challenge because there is paucity of training datasets.In this episode, PhD students Sandeep and Oindrila walked us through their work on creating 3D animals using 2D data. Join us to learn about their pipelines, quality control, tie in with iNaturalist, and how this tech could streamline FX pipelines.

Today, we sat down with Dr. Ignacio Escalante Meza to learn about opiliones and treehoppers. Opiliones, known as “daddy long legs” in the US, are understudied arachnids known for their tenacious locomotor behavior, sociality, and chemical communication. Treehoppers communicate through the stems of plants using vibrations. They can signal danger, attract mates, and communicate with their offspring. Join us to learn how researchers turn their vibrations into sound waves and study what they have to say.

Human shipping operations have increased significantly in the past few decades.  While that means international trade and cheap goods for humans, it also means the ocean has experienced an increase in noise pollution.  This has a measurable negative impact on marine mammals and other aquatic life.  Could mathematics be the solution?  This interview explores how optimization techniques can guide voyage optimization in a way that handles multiple optimization objectives including fuel cost and sound reduction.

Robbie Moon from the Georgia Tech Scheller College of Business joins us to discuss the analysis of unstructured data and the application of NLP methodologies towards financial data.

Have you ever participated in citizen science? Do you want to? One of the most popular platforms for crowdsourcing biodiversity data is iNaturalist. In addition to being a great science tool, the iNaturalist app can help you identify the organisms you encounter every day. We talked to Executive Director Scott Laurie about how scientists use iNaturalist. We also got to discuss what makes iNaturalist’s AI species recognition so good, and how citizen scientists are constantly providing high-quality training data. Listen in and learn how this fun-to-use tool works, where it's headed, and how you can get involved.