Phylogenetics

Phylogenetics is the reconstruction and analysis of trees and networks to describe and understand the evolution of species, populations and individuals. It is widely used in molecular biology and other areas of classification (such as linguistics), and has both led to and benefited from the development of new mathematical, statistical and computational techniques. Although the foundations of phylogenetics were laid down many decades ago, it is currently experiencing an exciting renaissance due to the wealth and types of biological data that are now becoming available. This programme will bring together key researchers in phylogenetics and related areas to further develop this important area of mathematical biology. The main themes that will be worked on during this programme are new data types in phylogenetics; modelling reticulate evolution; constructing large trees; probabilistic models of evolution; and phylogenetic combinatorics. These themes provide a rich source of mathematical problems in areas such as combinatorics, graph theory, probability theory, topology, and algebraic geometry. Solutions to these problems will provide new insights to questions that are central to contemporary evolutionary biology. EVENTS: - Spitalfields Day - Yggdrasil: Reconstructing the Tree of Life http://www.newton.ac.uk/programmes/PLG/PLG_Spitalfields.html - Current Challenges and Problems in Phylogenetics http://www.newton.ac.uk/programmes/PLG/plgw01.html - Future Directions in Phylogenetic Methods and Models http://www.newton.ac.uk/programmes/PLG/plgw03.html - Phylogenetics: New data, new Phylogenetic challenges http://www.newton.ac.uk/programmes/PLG/plgw05.html

Estimating ultra-large phylogenies and alignments

Warnow, T (University of Texas at Austin) Friday 24 June 2011, 11:30-12:30

06-28
56:13

The combinatorics of distance-based tree inference

Pardi, F (CNRS) Friday 24 June 2011, 10:40-11:00

06-28
17:50

Assessing the limits of phylogenomics: can too much data be a bad thing?

Bininda-Emonds, O (Carl von Ossietzky Universität Oldenburg) Friday 24 June 2011, 09:00-10:00

06-27
01:04:29

Stochastic Errors vs. Modeling Errors in Distance Based Phylogenetic Reconstructions

Doerr, D (Bielefeld ) Friday 24 June 2011, 10:20-10:40

06-27
20:34

Integrative analysis if environmental sequences

Huson, D (University of Tubingen) Thursday 23 June 2011, 14:00-15:00

06-27
01:00:47

Mammalian phylogeny reveals recent diversi cation rate shifts

Stadler, T (ETH Zürich) Thursday 23 June 2011, 12:10-12:30

06-27
25:01

A generalization of Stirling numbers and distribution of phylogenetic trees

Czabarka, E (South Carolina) Thursday 23 June 2011, 11:50-12:10

06-27
17:17

A Lie algebraic classification of continuous-time Markov models

Sumner, J (Tasmania) Thursday 23 June 2011, 11:30-11:50

06-27
22:34

Tree reconciliations: beyond the LCA mapping

Wu, T (National University of Singapore) Thursday 23 June 2011, 10:40-11:00

06-27
19:06

Speciation & Extinction Rate Estimation from Phylogenetic Trees

Hordijk, W (Lausanne) Thursday 23 June 2011, 10:00-10:20

06-27
22:15

Trees as representations of evolutionary information worth keeping

Mooers, A (Simon Fraser University) Thursday 23 June 2011, 09:00-10:00

06-27
59:54

Are there alternatives to handling site-to-site rate variation in evolutionary characters

McInerney, JO (National University of Ireland) Wednesday 22 June 2011, 16:00-17:00

06-27
01:06:53

An empirical study of the effect of sequence alignment on phylogenetic analysis

Blackburne, B (Manchester) Wednesday 22 June 2011, 15:00-15:20

06-27
20:41

Modelling protein evolution

Gascuel, O (CNRS) Wednesday 22 June 2011, 14:00-15:00

06-27
57:39

Sequence Classification using Reference Taxonomies

Valiente, G (Technical University of Catalonia) Wednesday 22 June 2011, 11:30-12:30

06-24
01:03:44

Evaluating the goodness of fit between a phylogenetic model and an alignment

von Haeseler, A (MFPL, Vienna) Wednesday 22 June 2011, 09:00-10:00

06-24
57:49

Phylodynamic inference - accounting for the interaction of evolutionary and ecological processes

Kühnert, D (Auckland) Wednesday 22 June 2011, 10:40-11:00

06-24
15:40

Genome sequencing of Leishmania donovani clinical lines reveals dynamic phylogenetic variation

Downing, T (Wellcome Trust Sanger Institute) Wednesday 22 June 2011, 10:00-10:20

06-24
21:10

New methods of identifying fast-evolving sites in aligned sequence data

Jermiin, L (CSIRO Ecosystem Sciences (CES)) Tuesday 21 June 2011, 16:50-17:10

06-24
24:42

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