Ecological genomics from metagenomic data?

Update: 2014-03-31

Description

In this talk I will briefly review the information that isolate-based genome sequencing has provided on ecological questions. I will then describe how these insights could be built upon using metagenomic data. Finally, I will discuss how this can be expanded to test ideas about competition, dispersal and diversity from ecological theory. Throughout I will focus on Campylobacter as a model system.

Comments

In Channel

Inferring genotype-phenotype relationships from (meta-)genomes

2014-06-0254:03

Modelling macroecological patterns: Neutral theory and beyond

2014-04-1433:21

Why mixture modelling?

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Lessons learned from operating a big metagenomics resource

2014-04-0258:23

Burrows-Wheeler Transform (BWT) based methods for assembly and haplotype analysis

2014-04-0201:07:00

Reasonable names and reasonable terms for Bacteria and Archaea

2014-04-0256:58

Waste Not, Want Not: Why Rarefying Microbiome Data is not an optimal normalization procedure

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Microbiome, Metagenomics and High-dimensional Compositional Data Analysis

2014-03-3155:52

Linking taxa to function through contig clustering of microbial metagenomes

2014-03-3143:54

Application of Bayesian model averaging and population Monte Carlo to inference from metagenomic mixture

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Statistical Machine Learning for Modeling Early Respiratory Microbiota Composition

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Digging into the soil metagenome

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Inferring Mixed Viral Populations

2014-03-3132:04

New bioinformatic resources for taxonomic assignment of metagenomic NGS data: BioMaS, ITSoneDB and SARMA

2014-03-3130:03

Using metatranscriptomics to make global predictions: The impact of temperature on marine phytoplankton resource allocation and metabolism

2014-03-3137:58