Ep. 56: scGET-seq. Studying chromatin at higher resolution
Description
In this podcast episode, I talk with Francesca Giannese about an exciting new method for studying chromatin at the single-cell level called scGET-seq. Unlike previous methods such as scATAC-seq, which only allow us to study open chromatin, scGET-seq provides insights into both open and closed chromatin. This breakthrough can lead to a deeper understanding of how chromatin structure impacts gene regulation in individual cells. Tune in to learn more about how scGET-seq works and its potential applications in research.
Contacts for support on scGET-seq implementation:
* Francesca Giannese (wet-lab protocol implementation - enzyme requests)
* Davide Cittaro (data analysis)
More information about scGET-seq
Data Analysis
* Analyzing genomic and epigenetic profiles in single cells by hybrid transposase (scGET-seq)
* Analysis and modeling of scGET-seq data
Application
* Cancer evolution (EMT in pancreatic cancer)
This is a public episode. If you would like to discuss this with other subscribers or get access to bonus episodes, visit thesinglecellworld.substack.com
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