Reproducibility in Neuroscience – Mats van Es on FieldTrip reproducescript
Description
#9:
Mats van Es joins Arfon and Abby to discuss reproducible science and
the functionality he added to FieldTrip, a MATLAB software toolbox for
analyzing brain imaging data.
Mats is a cognitive neuroscientist at the University of Oxford.
You can follow Mats on Twitter/X @mats_van_es.
See the show notes: https://blog.joss.theoj.org/2024/05/josscast-9-reproducibility-in-neuroscience
Episode Highlights
- [00:03:11 ] Introduction to FieldTrip and reproducescript
- [00:06:30 ] Config-Driven Science & Reproducibility
- [00:11:42 ] Using MATLAB in Open Source Software
- [00:21:02 ] The State of Open Source Software in Neuroscience
- [00:21:53 ] Publishing in JOSS
- [00:23:35 ] Future Directions and Contributions
Links
- JOSS paper: https://joss.theoj.org/papers/10.21105/joss.05566
- FieldTrip repository: https://github.com/fieldtrip/fieldtrip
- OHBA Software Library or OSL https://github.com/OHBA-analysis/osl
- OSL Dynamics https://github.com/OHBA-analysis/osl-dynamics
- Mats on Twitter/X @mats_van_es https://twitter.com/mats_van_es
- The Journal of Open Source Software (Twitter/X, blog)
- @arfon on (fosstodon, Linkedin, GitHub, website)
- @abbycabs on (Twitter/X, hachyderm, bsky, Linkedin, GitHub, website)
- Donate to JOSS
See the show notes: https://blog.joss.theoj.org/2024/05/josscast-9-reproducibility-in-neuroscience
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Supercharge your research with the latest scientific software showcased in the Journal of Open Source Software (JOSS). Hear directly from authors on their work, their motivations, and new ways open source software can accelerate your work.
Hosted by editor-in-chief Arfon Smith and founding editor Abby Cabunoc Mayes, each episode features an interview with different authors of published papers in JOSS. Tune in to learn about the latest developments in research software engineering and open science, and how they are changing the way research is conducted.
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