Tune in to hear all about Pixelgen Technologies - creators of a novel technology
for doing single-cell spatial proteomics.

We chat about how this fascinating technology works, what you can do with the data
and why they chose to develop their analysis suite as an open-source nf-core pipeline.

Links:

• Software:
  
  
  
  • nf-core/pixelator pipeline
  
  
  • Pixelator Python package
  
  
  
  


• Science:
  
  
  
  • Nature Methods publication: “Molecular pixelation: spatial proteomics of single cells by sequencing”
  
  
  
  


• Presentations:
  
  
  
  • Nextflow Summit 2022 talk: “Pixelgen Technologies ❤︎ Nextflow”
  
  
  • Nextflow Summit 2024 Boston talk: “Nextflow allows Pixelgen innovation engine to reach the market quicker”
  
  
  • Nextflow Summit 2024 Barcelona
  
  
  
  


• Pixelgen:
  
  
  
  • Pixelgen Technologies homepage
  
  
  • @PixelgenTech on twitter / X and LinkedIn
  
  
  
  


• BioLizard:
  
  
  
  • BioLizard homepage
  
  
  • @BioLizard_nv on twitter / X and LinkedIn
  
  
  
  

Chapters:

• Start (00:00 )


• Welcome (00:09 )


• Introductions (00:50 )


• Intro to Pixelgen Technologies (01:41 )


• Lab methods (03:08 )


• Nature Methods publication (06:15 )


• Data visualisation (09:35 )


• Working with single cell data (12:29 )


• Cell interactions (15:06 )


• Why Pixelgen chose open source (16:05 )


• Pixelator Python package (20:10 )


• Building within nf-core (21:40 )


• Florian - Biolizard (23:01 )


• Pipeline overview (25:19 )


• Using nf-core from a commercial setting (26:50 )


• Coming out of stealth (28:53 )


• Extending Pixelator (32:24 )


• Dealing with customers (34:58 )


• Looking to the future (39:38 )


• Interactive analysis (41:32 )


• Advice for others (43:12 )


• Pixelgen at the Nextflow Summit (45:16 )